Meeting 27th May 2020
 

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compbio.dagprojects:meetings20200527 [2020/05/27 14:13] (current)
jabbott created
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 +== Meeting 27th May 2020 ==
 +
 +Present: James, Marek, William
 +
 +=== Marek ===
 +
 +Sumolyation combining data types. Now want chip-seq peaks correlating with rna-seq de genes. Chip-Seq/Atac-seq comparison done - tried clustering on RNA-Seq/atac-seq with shiny app. Hard to extract things from it.
 +
 +LRKK2 phoshpholipid - small dataset but multidimensional.
 +
 +R packing request - will suggest a summer student may be better since there are may be many problems involved in this.
 +
 +=== William ===
 +
 +Journal club talk - probably spent to long on this!
 +
 +EDC - had a look at scan used to generate latest files to double check, looking at lego plots for all screened bins. They are mostly unremarkable, and the problems of inconsistency between populations seem to have been addressed. 
 +
 +Summary files need to be sent to Sara
 +
 +=== James ===
 +
 +Mostly metagenomics - prokaryotic terms still dominanting functional enrichment analysis, which looks like it is being driven by fungi within the metagenome. Separated out bacterial and fungal annotated genes and analysed separately. The fungal genes show much greater fold-changes than bacterial, hence were masking the bacterial effects. Some of the same terms come out in both fungal and bacterial sets though. Senga is currently looking at the intersections between the sets. Meanwhile, I've been mapping taxa to go terms so we can focus in on particular terms of interest and look at who is involved in this.
  
 
compbio.dagprojects/meetings20200527.txt · Last modified: 2020/05/27 14:13 by jabbott
 
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