Meeting 17th June 2020
 

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compbio.dagprojects:meetings20200617 [2020/06/17 14:19] (current)
jabbott created
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 +=== Meeting 17th June 2020 ===
 +
 +Present: Marek, William, James
 +
 +== Marek ==
 +
 +SUMOlyation project - finding consistencies between peaks in diff techs. Looking at whether up/down regulated genes are of specific biotype. Nothing much popping out, but most lncRNA at 48 hours. Next step chip-seq peaks - looking at peaks around TSS but defining location of these not straightforward.  
 +
 +Swedlow - all ok...
 +
 +== William ==
 +
 +Looking at output files Sara requires. Also created abridged version of LOF mutations table with less columns. Diagnostic information for genotypes makes format more complicated, which is more vcf-like but are for cnvs. Subfields are : delimited with true/false for in-tails etc. Code needed to be separated into different function. Need to have a look at the logistic regression - had a quick look using dominant model but additive model may give a bit more power.
 +
 +== James ==
 +
 +Davide metagenomes - round 2 assembly now complete. Ended up having to create 4 pools, one per replica, since 1 pool exceeded available memory. This has resulted in 21M protein clusters, up from the original 19M. Downstream analysis now underway.
 +
 +Grants - Hedda now done - 4 months costed for the work. Simon Arthur has put in for 50 hours of general support.
 +
 +Honors projects this year are likley to involve far more computational projects, with students who have not taken bioinformatics modules. Much support is likely to be required...
  
 
compbio.dagprojects/meetings20200617.txt · Last modified: 2020/06/17 14:19 by jabbott
 
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